SuCComBase

SCC Gene Description

Gene name	CCA1
AGI ID	AT2G46830
Gene length	608
Uniprot ID	P92973
Protein Name	CIRCADIAN CLOCK-ASSOCIATED1
Synonym	N/A
EC number	N/A
Entrez Gene	819296
Refseq mrna	NM_001337221.1
Refseq protein	NP_001318437.1
Function	The aphid feeding in CCA1 overexpression plants (CCA1-OX) showed significant comparisons with those on Col-0 in terms of lower reproduction and reduced body size and weight. Furthermore, basal indolic GSLs were higher in CCA1-OX compared to Col-0, suggesting the importance of CCA1 in the plant defense against aphids
Group	GSL transcription factor
Reference	Lei et al. (2019)

Organism	AGI ID	Gene Name	Protein Name	Identity	E-Value	Description
Cabbage	AT2G46830	CCA1	CIRCADIAN CLOCK-ASSOCIATED1	68.489	0.00E+00
Broccoli	AT2G46830	CCA1	CIRCADIAN CLOCK-ASSOCIATED1	65.954	0.00E+00

GO ID	Ontology	GO Term	Description
GO:0003677	MF	DNA binding	Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
GO:0003700	MF	transcription factor activity, sequence-specific DNA binding	A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a gene in order to modulate transcription. Regulatory regions include promoter
GO:0005515	MF	protein binding	Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
GO:0005634	CC	nucleus	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some
GO:0006355	BP	regulation of transcription, DNA-templated	Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
GO:0007623	BP	circadian rhythm	Any biological process in an organism that recurs with a regularity of approximately 24 hours.
GO:0009409	BP	response to cold	Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cold stimulus, a temperature stimulus below the optimal temperature for that or
GO:0009639	BP	response to red or far red light	Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a red or far red light stimulus. Red light is electromagnetic radiation of wavele
GO:0009651	BP	response to salt stress	Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating an increase or decrease in the concentration of salt (parti
GO:0009723	BP	response to ethylene	Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an ethylene (ethene) stimulus.
GO:0009733	BP	response to auxin	Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a hormone stimulus.
GO:0009737	BP	response to abscisic acid	Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an abscisic acid stimulus.
GO:0009739	BP	response to gibberellin	Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a gibberellin stimulus.
GO:0009751	BP	response to salicylic acid	Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a salicylic acid stimulus.
GO:0009753	BP	response to jasmonic acid	Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a jasmonic acid stimulus.
GO:0010243	BP	response to organonitrogen compound	Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an organonitrogen stimulus
GO:0010264	BP	myo-inositol hexakisphosphate biosynthetic process	The chemical reactions and pathways resulting in the formation of phytic acid, myo-inositol hexakisphosphate, a regulator of intracellular signaling, a highly abundant animal anti-nutrient and a phosphate and mineral storage compound in plant seeds
GO:0010468	BP	regulation of gene expression	Any process that modulates the frequency, rate or extent of gene expression. Gene expression is the process in which a gene's coding sequence is converted into a mature gene product or products (proteins or RNA). This includes the production of an RNA tra
GO:0019904	MF	protein domain specific binding	Interacting selectively and non-covalently with a specific domain of a protein.
GO:0042752	BP	regulation of circadian rhythm	Any process that modulates the frequency, rate or extent of a circadian rhythm
GO:0042754	BP	negative regulation of circadian rhythm	Any process that stops, prevents, or reduces the frequency, rate or extent of a circadian rhythm behavior.
GO:0043254	BP	regulation of protein-containing complex assembly	Any process that modulates the frequency, rate or extent of protein complex assembly
GO:0043496	BP	regulation of protein homodimerization activity	Any process that modulates the frequency, rate or extent of protein homodimerization, interacting selectively with an identical protein to form a homodimer
GO:0043565	MF	sequence-specific DNA binding	Interacting selectively and non-covalently with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding.
GO:0045892	BP	negative regulation of transcription, DNA-templated	Any process that stops, prevents, or reduces the frequency, rate or extent of cellular DNA-templated transcription.
GO:0045893	BP	positive regulation of transcription, DNA-templated	Any process that activates or increases the frequency, rate or extent of cellular DNA-templated transcription.
GO:0046686	BP	response to cadmium ion	Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cadmium (Cd) ion stimulus.
GO:0048574	BP	long-day photoperiodism, flowering	A change from the vegetative to the reproductive phase as a result of detection of, or exposure to, a period of light that exceeds the critical day length.

Pubmed ID	Authors	Year	Title	Journal	Description
31527087	Lei, J.; Jayaprakasha, G. K.; Singh, J.; Uckoo, R.; Borrego, E. J.; Finlayson, S.; Kolomiets, M.; Patil, B. S.; Braam, J.; Zhu-Salzman, K.	2019	CIRCADIAN CLOCK-ASSOCIATED1 Controls Resistance to Aphids by Altering Indole Glucosinolate Production	Plant Physiol