SuCComBase

Sulfur Containing Compound Database

SCC Gene Description

Gene name MED5
AGI ID AT3G23590
Gene length 1309
Uniprot ID Q9LUG9
Protein Name Mediator Subunit 5
Synonym MED33A
EC number N/A
Entrez Gene 821938
Refseq mrna NM_113262.4
Refseq protein NP_189001.1
Function Mediator Subunit 5 (MED5) involves in the crosstalk between phenylpropanoid and GSL biosynthesis. Expressly, the accumulation of GSL derivatives (aldoximes) would limit phenylpropanoid biosynthesis that requires MED5
Group GSL transcription factor
Reference Kim et al. (2020)
Organism AGI ID Gene Name Protein Name Identity E-Value Description

Papaya

AT3G23590

MED5

Mediator Subunit 5

41.297

0

Papaya

AT3G23590

MED5

Mediator Subunit 5

67.338

3.27E-180

Papaya

AT3G23590

MED5

Mediator Subunit 5

73.138

8.60E-146

Papaya

AT3G23590

MED5

Mediator Subunit 5

60.544

1.78E-103

Papaya

AT3G23590

MED5

Mediator Subunit 5

52.557

5.99E-97

Cabbage

AT3G23590

MED5

Mediator Subunit 5

89.381

0.00E+00

Cabbage

AT3G23590

MED5

Mediator Subunit 5

89.313

0.00E+00

Cabbage

AT3G23590

MED5

Mediator Subunit 5

83.316

0.00E+00

Cabbage

AT3G23590

MED5

Mediator Subunit 5

53.904

0.00E+00

Broccoli

AT3G23590

MED5

Mediator Subunit 5

91.137

0

Broccoli

AT3G23590

MED5

Mediator Subunit 5

69.492

1.41E-53

Broccoli

AT3G23590

MED5

Mediator Subunit 5

86.869

7.12E-95

GO ID Ontology GO Term Description

GO:0003674

MF

molecular_function_unknown

A molecular process that can be carried out by the action of a single macromolecular machine, usually via direct physical interactions with other molecular entities. Function in this sense denotes an action, or activity, that a gene product (or a complex)

GO:0007155

BP

cell adhesion

The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix, via cell adhesion molecules.

GO:0010090

BP

trichome morphogenesis

The process in which the structures of a hair cell (trichome) cell are generated and organized

GO:0016592

CC

mediator complex

A protein complex that interacts with the carboxy-terminal domain of the largest subunit of RNA polymerase II and plays an active role in transducing the signal from a transcription factor to the transcriptional machinery.

GO:0045010

BP

actin nucleation

The initial step in the formation of an actin filament, in which actin monomers combine to form a new filament

GO:0048765

BP

root hair cell differentiation

The process in which a relatively unspecialized cell acquires specialized features of a root hair cell.

GO:0071555

BP

cell wall organization

A process that results in the assembly, arrangement of constituent parts, or disassembly of the cell wall, the rigid or semi-rigid envelope lying outside the cell membrane of plant, fungal and most prokaryotic cells, maintaining their shape and protecting

GO:2000762

BP

regulation of phenylpropanoid metabolic process

Any process that modulates the frequency, rate or extent of phenylpropanoid metabolic process

Pubmed ID Authors Year Title Journal Description

31408530

Kim, J. I.; Zhang, X.; Pascuzzi, P. E.; Liu, C. J.; Chapple, C.

2020

Glucosinolate and Phenylpropanoid Biosynthesis Are Linked by Proteasome-Dependent Degradation of PAL

New Phytol