SuCComBase

Sulfur Containing Compound Database

Potential SCC Gene Description

Gene name AT5G63180
AGI ID AT5G63180
Gene length 432
Uniprot ID Q93Z25
Protein Name Probable pectate lyase 22
Synonym MDC12_15
EC number 4.2.2.2
Entrez Gene 836439
Refseq mrna NM_125713
Refseq protein NP_568967
Database GeneMANIA
GeneMANIA
GeneMANIA
GeneMANIA
GeneMANIA
GeneMANIA
GeneMANIA
GeneMANIA
GO ID Ontology GO Term Description

GO:0005576

CC

extracellular region

A location, relative to cellular compartments and structures, occupied by a macromolecular machine when it carries out a molecular function. There are two ways in which the gene ontology describes locations of gene products: (1) relative to cellular struc

GO:0016829

MF

lyase activity

Catalysis of the cleavage of C-C, C-O, C-N and other bonds by other means than by hydrolysis or oxidation, or conversely adding a group to a double bond. They differ from other enzymes in that two substrates are involved in one reaction direction, but onl

GO:0030570

MF

pectate lyase activity

Catalysis of the reaction: a pectate = a pectate + a pectate oligosaccharide with 4-(4-deoxy-alpha-D-galact-4-enuronosyl)-D-galacturonate end. This reaction is the eliminative cleavage of pectate to give oligosaccharides with 4-deoxy-alpha-D-gluc-4-enuron

GO:0045490

BP

pectin catabolic process

The chemical reactions and pathways resulting in the breakdown of pectin, a polymer containing a backbone of alpha-1,4-linked D-galacturonic acid residues.

GO:0046872

MF

metal ion binding

Interacting selectively and non-covalently with any metal ion.