SuCComBase

Sulfur Containing Compound Database

Potential SCC Gene Description

Gene name PMDH2
AGI ID AT5G09660
Gene length 354
Uniprot ID Q9ZP05
Protein Name Malate dehydrogenase 2, peroxisomal
Synonym MTH16.8
EC number 1.1.1.37
Entrez Gene 830825
Refseq mrna NM_121003.4
Refseq protein NP_196528.1
Database
GO ID Ontology GO Term Description

GO:0005737

CC

cytoplasm

All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.

GO:0005773

CC

vacuole

A closed structure, found only in eukaryotic cells, that is completely surrounded by unit membrane and contains liquid material. Cells contain one or several vacuoles, that may have different functions from each other. Vacuoles have a diverse array of fun

GO:0005777

CC

peroxisome

A small organelle enclosed by a single membrane, and found in most eukaryotic cells. Contains peroxidases and other enzymes involved in a variety of metabolic processes including free radical detoxification, lipid catabolism and biosynthesis, and hydrogen

GO:0005975

BP

carbohydrate metabolic process

The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule.

GO:0006097

BP

glyoxylate cycle

A modification of the TCA cycle occurring in some plants and microorganisms, in which isocitrate is cleaved to glyoxylate and succinate. Glyoxylate can then react with acetyl-CoA to form malate.

GO:0006099

BP

tricarboxylic acid cycle

A nearly universal metabolic pathway in which the acetyl group of acetyl coenzyme A is effectively oxidized to two CO2 and four pairs of electrons are transferred to coenzymes. The acetyl group combines with oxaloacetate to form citrate, which undergoes s

GO:0006108

BP

malate metabolic process

The chemical reactions and pathways involving malate, the anion of hydroxybutanedioic acid, a chiral hydroxydicarboxylic acid. The (+) enantiomer is an important intermediate in metabolism as a component of both the TCA cycle and the glyoxylate cycle.

GO:0009507

CC

chloroplast

A chlorophyll-containing plastid with thylakoids organized into grana and frets, or stroma thylakoids, and embedded in a stroma.

GO:0009735

BP

response to cytokinin

Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cytokinin stimulus.

GO:0009941

CC

chloroplast envelope

The double lipid bilayer enclosing the chloroplast and separating its contents from the rest of the cytoplasm; includes the intermembrane space.

GO:0016615

MF

malate dehydrogenase activity

Catalysis of the reversible conversion of pyruvate or oxaloacetate to malate.

GO:0030060

MF

L-malate dehydrogenase activity

Catalysis of the reaction: (S)-malate + NAD+ = oxaloacetate + NADH + H+.

GO:0031998

BP

regulation of fatty acid beta-oxidation

Any process that modulates the frequency, rate or extent of fatty acid bbeta-oxidation.

GO:0042579

CC

microbody

Cytoplasmic organelles, spherical or oval in shape, that are bounded by a single membrane and contain oxidative enzymes, especially those utilizing hydrogen peroxide (H2O2).

GO:0048046

CC

apoplast

The cell membranes and intracellular regions in a plant are connected through plasmodesmata, and plants may be described as having two major compartments: the living symplast and the non-living apoplast. The apoplast is external to the plasma membrane and

GO:0080093

BP

regulation of photorespiration

Any process that modulates the rate, frequency or extent of photorespiration. Photorespiration is a light-dependent catabolic process occurring concomitantly with photosynthesis in plants (especially C3 plants) whereby dioxygen (O2) is consumed and carbon