SuCComBase

Sulfur Containing Compound Database

Potential SCC Gene Description

Gene name AT3G54640
AGI ID AT3G54640
Gene length 312
Uniprot ID Q42529
Protein Name Tryptophan synthase alpha chain, chloroplastic/ Indole-3-glycerol-phosphate lyase, chloroplastic
Synonym TRP3
EC number 4.2.1.20 4.1.2.8
Entrez Gene 824629
Refseq mrna NM_115321
Refseq protein NP_567004
Database GeneMANIA
ATTED
GeneMANIA
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GeneMANIA
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GeneMANIA
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GeneMANIA
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GeneMANIA
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GeneMANIA
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GeneMANIA
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GO ID Ontology GO Term Description

GO:0000162

BP

tryptophan biosynthetic process

The chemical reactions and pathways resulting in the formation of tryptophan, the chiral amino acid 2-amino-3-(1H-indol-3-yl)propanoic acid; tryptophan is synthesized from chorismate via anthranilate.

GO:0004834

MF

tryptophan synthase activity

Catalysis of the reaction: L-serine + (1S,2R)-1-C-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O.

GO:0009507

CC

chloroplast

A chlorophyll-containing plastid with thylakoids organized into grana and frets, or stroma thylakoids, and embedded in a stroma.

GO:0009570

CC

chloroplast stroma

The space enclosed by the double membrane of a chloroplast but excluding the thylakoid space. It contains DNA, ribosomes and some temporary products of photosynthesis.

GO:0009630

BP

gravitropism

The orientation of plant parts under the stimulation of gravity.

GO:0009735

BP

response to cytokinin

Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cytokinin stimulus.

GO:0009851

BP

auxin biosynthetic process

The chemical reactions and pathways resulting in the formation of auxins, plant hormones that regulate aspects of plant growth.

GO:0033984

MF

indole-3-glycerol-phosphate lyase activity

Catalysis of the reaction: (1S,2R)-1-C-(indol-3-yl)glycerol 3-phosphate = indole + D-glyceraldehyde 3-phosphate.

GO:0042742

BP

defense response to bacterium

Reactions triggered in response to the presence of a bacterium that act to protect the cell or organism.

GO:0052544

BP

defense response by callose deposition in cell wall

Any process in which callose is transported to, and/or maintained in, the cell wall during the defense response. Callose is a linear 1,3-beta-d-glucan formed from UDP-glucose and is found in certain plant cell walls.