SuCComBase

Sulfur Containing Compound Database

Potential SCC Gene Description

Gene name AT3G27400
AGI ID AT3G27400
Gene length 412
Uniprot ID Q9LTZ0
Protein Name Putative pectate lyase 11
Synonym K1G2.11
EC number 4.2.2.2
Entrez Gene 822361
Refseq mrna NM_113655
Refseq protein NP_189376
Database GeneMANIA
GeneMANIA
GeneMANIA
GeneMANIA
GeneMANIA
GeneMANIA
GeneMANIA
GeneMANIA
GO ID Ontology GO Term Description

GO:0005576

CC

extracellular region

A location, relative to cellular compartments and structures, occupied by a macromolecular machine when it carries out a molecular function. There are two ways in which the gene ontology describes locations of gene products: (1) relative to cellular struc

GO:0009624

BP

response to nematode

Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus from a nematode.

GO:0030570

MF

pectate lyase activity

Catalysis of the reaction: a pectate = a pectate + a pectate oligosaccharide with 4-(4-deoxy-alpha-D-galact-4-enuronosyl)-D-galacturonate end. This reaction is the eliminative cleavage of pectate to give oligosaccharides with 4-deoxy-alpha-D-gluc-4-enuron

GO:0045490

BP

pectin catabolic process

The chemical reactions and pathways resulting in the breakdown of pectin, a polymer containing a backbone of alpha-1,4-linked D-galacturonic acid residues.

GO:0046872

MF

metal ion binding

Interacting selectively and non-covalently with any metal ion.